Abstract: The education on professional degree master in clinical pharmacy is mainly intended to train high-level applied professionals in clinical pharmacy. ‘Healthy China Initiative’ aims to promote national health and provide comprehensive health service for the whole people in China and the initiative also presents some novel requirements and enlightenments for the training of professional master degree in clinical pharmacy. Considering special competence of clinical pharmacy, the influence of ‘Healthy China Initiative’ on teaching reform in the education on professional master degree in clinical pharmacy was discussed briefly in this article for providing references to the improvement of high-level applied professionals training system.