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2023—2024年贵州省流感样病例人鼻病毒流行病学及VP4/VP2基因特征分析

Epidemiological characteristics of human rhinovirus and VP4/VP2 gene in influenza-like cases in Guizhou province from 2023 to 2024

  • 摘要:
    目的 了解贵州省流感样病例中人鼻病毒的流行特征,并分析人鼻病毒的VP4/VP2基因特征及变化规律。
    方法 收集贵州省2023—2024年流感样病例咽拭子8 451份,通过多重荧光定量PCR方法对其进行人鼻病毒(HRV)、流感病毒(IFV)、呼吸道合胞病毒(RSV)、副流感病毒(HPIV)、腺病毒(ADV)、普通冠状病毒(HCoV)、新型冠状病毒(SARS-CoV-2)、偏肺病毒(HMPV)、肠道病毒(EV)、博卡病毒(HBoV)和肺炎支原体(MP)共11种常见病原体检测;采用SPSS 22对各病原体检出率进行χ2/Fisher检验分析;筛选HRV阳性样本进行VP4/VP2基因测序,采用MEGA等软件进行VP4/VP2基因分型及遗传进化分析。
    结果 共检测出11种常见病原体阳性样本3 602份,总阳性率为42.62%,单一病原体检出率最高为SARS-CoV-2(6.63%),其次是HRV(6.41%)。HRV年龄组间检出率差异有统计学意义(P<0.001),检出率最高为0~4岁(8.33%),≥60岁检出率最低(2.02%);HRV不同季节检出率差异有统计学意义(P<0.001),秋季检出率最高(9.20%),夏季(4.03%)检出率最低。HRV混合感染检出率为1.93%,以HRV与EV的混合感染检出最多,检出率为0.56%。共获得42条HRV的VP4/VP2基因序列,其中32株HRV-A,2株HRV-B,8株HRV-C。
    结论  HRV是贵州省2023—2024年流感样病例的主要病原体之一,并存在HRV-A、HRV-B、HRV-C的共同流行。

     

    Abstract:
    Objective To understand the epidemiological characteristics of human rhinovirus (HRV) in influenza-like cases in Guizhou province, and analyze the VP4/VP2 gene features and variation patterns of HRV.
    Methods A total of 8 451 throat swabs were collected from influenza-like cases in Guizhou province from 2023 to 2024. Multiplex fluorescent quantitative PCR was employed to detect 11 common pathogens: HRV, influenza virus (IFV), respiratory syncytial virus (RSV), human parainfluenza virus (HPIV), adenovirus (ADV), human common coronavirus (HCoV), severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), human metapneumovirus (HMPV), enterovirus (EV), human bocavirus (HBoV), and Mycoplasma pneumoniae (MP). SPSS 22 was used for χ2/Fisher test on the detection rates of various pathogens. The HRV-positive samples were selected for VP4/VP2 gene sequencing, and MEGA was used for VP4/VP2 gene typing and phylogenetic analysis.
    Results A total of 3 602 positive samples for 11 common pathogens were detected, with a total positive rate of 42.62%. SARS-CoV-2 showed the highest single-pathogen detection rate (6.63%), followed by HRV (6.41%). The detection rate of HRV varied among age groups (P < 0.001), being the highest in the age group of 0–4 years old (8.33%) and the lowest in the age group of ≥ 60 years old (2.02%). In addition, the detection rate of HRV varied among different seasons (P < 0.001), being the highest in autumn (9.20%) and the lowest in summer (4.03%). The detection rate of mixed infections of HRV was 1.93%, and the mixed infection of HRV and EV had the highest detection rate at 0.56%. A total of 42 HRV VP4/VP2 gene sequences were obtained, comprising 32 sequences of HRV-A, 2 sequences of HRV-B, and 8 sequences of HRV-C.
    Conclusions HRV is one of the main pathogens causing influenza-like cases in Guizhou province during 2023–2024, and HRV-A, HRV-B, and HRV-C coexist as the common species.

     

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