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贵州省城市污水中人类肠道病毒捕获与基因特征分析

Capturing and genetic characterization of human enteroviruses in municipal sewage in Guizhou province

  • 摘要:
    目的 基于贵州省城市污水管网,分析未经处理的城市污水中的人肠道病毒(HEVs)的污染状况,并确定污水中病毒血清型。
    方法 2024年11月—2025年1月,采集贵州省贵阳市(南明区)、遵义市(新蒲新区)、六盘水市(钟山区)及铜仁市(碧江区)监测点污水进水口水样,采用阴离子膜超声波洗脱法,将10份富集病毒的污水样接种于人横纹肌肉瘤细胞(RD)和人脊灰病毒受体基因的鼠肺细胞(L20B);经细胞培养获得的病毒阳性分离物提取RNA,采用逆转录聚合酶链反应(RT-PCR)扩增肠道病毒VP1基因,对获得性肠道病毒基因序列进行鉴定与系统发育分析。
    结果 从10份污水样品中分离得到26株脊髓灰质炎病毒(PV)疫苗相关株,11株非脊髓灰质炎病毒(NPEV)。经鉴定,PV疫苗相关Ⅰ型毒株为10株、Ⅲ型为16株;26株PV疫苗相关株与Sabin株相比VP1区核苷酸变异个数均<10个;另外,NPEV包括7株埃可病毒11型(E11)、1株埃可病毒6型(E6)以及柯萨奇病毒B组2型(CVB2)、3型(CVB3)和5型(CVB5)各1株。进化分析显示,7株E11病毒株属于D5基因亚型。
    结论 贵州城市污水管网的污水样品中可检出HEVs,但未发现脊灰野病毒(WPV)或疫苗衍生脊灰病毒(VDPV)。监测地区污水中的病毒检测数据证实了HEV潜在的环境污染,可为制定废水管理政策标准提供参考依据。

     

    Abstract:
    Objective  To analyze the contamination status of human enteroviruses (HEVs) in untreated municipal sewage and identify viral serotypes based on the municipal sewage network in Guizhou province.
    Methods Influent sewage samples were collected from monitoring sites in Guiyang city (Nanming district), Zunyi city (Xinpu new district), Liupanshui city (Zhongshan district), and Tongren city (Bijiang district) in Guizhou province from November 2024 to January 2025. Ten virus-enriched sewage samples were processed by a combined anion-exchange membrane adsorption-elution and ultrasound-assisted elution method. The concentrated viral particles were then inoculated into human rhabdomyosarcoma (RD) cells and mouse L20B cells expressing the human poliovirus receptor. RNA was extracted from virus-positive isolates obtained through cell culture, followed by reverse-transcription polymerase chain reaction (RT-PCR) to amplify the VP1 gene of enteroviruses. Genetic sequencing and phylogenetic analysis were performed to characterize the obtained viral strains.
    Results A total of 26 poliovirus (PV) vaccine-related strains and 11 non-polio enterovirus (NPEV) strains were isolated from the 10 sewage samples. Of the PV strains, 10 were of serotype I and 16 were of serotype Ⅲ. All the 26 PV vaccine-related strains exhibited fewer than 10 nucleotide variations in the VP1 region compared to the Sabin reference strains. The NPEV strains included seven echovirus 11 (E11) strains, one echovirus 6 (E6) strain, and one strain each of coxsackieviruses B2 (CVB2), B3 (CVB3), and B5 (CVB5). Phylogenetic analysis revealed that the seven E11 strains belonged to the genetic subcluster D5.
    Conclusions HEVs were detected in sewage samples from the municipal sewage system of Guizhou province, while no wild poliovirus or vaccine-derived poliovirus was identified. Viral surveillance data confirm the potential environmental contamination by HEVs and could inform the development of wastewater management policy standards.

     

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