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王艳, 马艳, 韩悦, 郭军巧. 辽宁省水痘-带状疱疹病毒基因型分析[J]. 中国公共卫生, 2012, 28(1): 76-78. DOI: 10.11847/zgggws2012-28-01-32
引用本文: 王艳, 马艳, 韩悦, 郭军巧. 辽宁省水痘-带状疱疹病毒基因型分析[J]. 中国公共卫生, 2012, 28(1): 76-78. DOI: 10.11847/zgggws2012-28-01-32
WANG Yan, MA Yan, HAN Yue, . Genotype analysis of varicella-zoster virus in Liaoning province[J]. Chinese Journal of Public Health, 2012, 28(1): 76-78. DOI: 10.11847/zgggws2012-28-01-32
Citation: WANG Yan, MA Yan, HAN Yue, . Genotype analysis of varicella-zoster virus in Liaoning province[J]. Chinese Journal of Public Health, 2012, 28(1): 76-78. DOI: 10.11847/zgggws2012-28-01-32

辽宁省水痘-带状疱疹病毒基因型分析

Genotype analysis of varicella-zoster virus in Liaoning province

  • 摘要: 目的了解辽宁省水痘-带状疱疹病毒(VZV)基因型别。方法选取水痘患者临床确诊病例7例,采集血清和咽拭子标本,分别检测VZV IgM抗体、扩增ORF22基因VZV核酸片断,进行核苷酸序列测定分析,测序结果与GenBank的VZV参考株基因序列进行比较。结果 7例临床确诊病例VZV IgM抗体均阳性(编号为VZV001~VZV007);其中3例的咽拭子标本扩增到目的片段(VZV001、VZV-002、VZV-005),测序结果证实为水痘-带状疱疹病毒;ORF22基因的单核苷酸多态性(SNP)分析显示,VZV-002与VZV-005基因序列完全一致,且在同一位点的碱基由C代替了A;VZV-001序列2个位点出现碱基代替,提示其基因可能发生点突变;与Dumas株序列比较,3株分离株在6个关键位点上有4个核苷酸不同,与P-Oka株则完全一致,3株VZV分离株的ORF22基因均鉴定为J基因型,与水痘-带状疱疹病毒P-Oka株的同源性为99.56%~99.78%。结论辽宁省检测到的3株VZV基因型均为J型。

     

    Abstract: ObjectiveTo examine the genetype of varicella-zoster virus in Liaoning province.MethodsThe serum and throat swabs speciments were collected from 7 patients clinically diagnosed with varicella for the detection varricellazoster virus(VZV)IgM and the amplification of DNA of the open reading frame(ORF)22.The DNA was sequenced and analyzed with the data of VZV reference strains downloaded from GenBank.ResultsAll the 7 patients were VZV IgM positive and the amplification,and sequencing of 3 throat swabs(VZV001,VZV-002,VZV-005)confirmed the VZV.The results of ORF22 single nucletotide polymorphism(SNP)analyses showed that VZV-002 and VZV-005 had the same sequence and the single base transvertion was A→C.The sequence of VZV-001 had 2 changed bases,suggesting the point mutation of the gene.compared with Dumas strain,the 3 strains had 4 bases different on 6 key site and completely matched with P-Oka strain.The 3 strains were identified as J genotype and the nucleotide homology was 99.56%-99.78% with P-Oka.ConclusionThe genotype of 3 VZV strains detected in Liaoning province belongs to J genetype.

     

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