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青岛地区2012—2014年甲型H1N1流感病毒基因特征

Phylogenetic analysis on influenza A (H1N1) virus isolated in Qingdao from 2012 to 2014

  • 摘要: 目的 了解2012—2014年山东省青岛地区人群甲型H1N1流行性感冒(流感)病毒流行株基因特征及变异趋势。方法 收集2012年4月—2014年3月青岛地区流感样病例咽试子2100份,分离鉴定136株,随机抽取 51株,应用逆转录聚合酶链反应(RT-PCR)扩增血凝素(HA)、神经氨酸酶(NA)、基质蛋白(MP)3个基因片段全长,并进行序列测定,对各基因片段进行系统发育分析及基因和氨基酸位点变异分析。结果 HA、NA进化树分析发现,2012—2014年青岛地区流行的甲型H1N1流感病毒分为3个分支;HA蛋白的氨基酸位点分析显示,部分毒株在抗原决定位点,受体结合位点以及其他位点上发生一定程度的变异,涉及15个氨基酸位点变化;NA蛋白的氨基酸位点分析显示,与疫苗株比较有10处氨基酸位点发生了明显变异;M2蛋白分析显示所有毒株均对金刚烷胺类药物耐药。结论 2012—2014年青岛地区流行的甲型H1N1流感病毒在抗原和受体结合位点均发生基因变异及抗药毒株的出现对流感防控提出更大的挑战。

     

    Abstract: Objective To study the prevalence and variation of influenza A (H1N1) viruses isolated in Qingdao from 2012 to 2014.Methods A total of 2 100 throat swabs were collected from patients with influenza-like illness in two sentinel hospitals in Qingdao from April 2012 to March 2014.Influenza A (H1N1) subtype was determined with reverse transcriptase-polymerase chain reaction (RT-PCR) and then inoculated into Madin-Darby canine kidney (MDCK) cells.The mutations of gene and amino acid locus were analyzed through the whole genome sequencing of hemagglutinin (HA),neuraminidase (NA),and matrix protein (MP) segments from some influenza A (H1N1) isolates.Results Of 136 strains isolated,51 influenza A (H1N1)virus strains were selected for sequencing.The phylogenetic tree of HA gene and NA gene revealed 3 clades of the viruses isolated.Analysis of amino acid residues for HA protein showed that there were mutations involving 15 amino acid sites in antigenic determinant region,receptor binding site (RBS) and other sites in some strains.Although the residues at the enzyme active sites of NA protein were strictly conservative,compared with the vaccine strains,10 residues were substituted in the transmembrane region,membrane anchor region,and drug/antibody binding region.One strain was observed to be resistant against oseltamivir and two strains against oseltamivir and zanamivir.The sequence analysis of M2 protein showed that all of the isolated A H1N1 viruses were resistant to amantadine drugs.Conclusion All the A H1N1 influenza virus prevalent in Qingdao from 2012 to 2014 presented continual variations inducing antigenic drift.All the isolations were adamantane-resistance,but most of the strains were susceptible to inhibitors of neruaminidase.

     

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